Post-transcriptional Gene Regulation in Plants 2024

›8:45 (3h15)

Session 2 : mRNA fate

8:45 - 12:00 (3h15)

Session 2 : mRNA fate

› Processes shaping mRNA poly(A) tails in Arabidopsis - Dominique Gagliardi, IBMP, Strasbourg, France 08:45-09:25 (40min)

› Untangling transcriptional and posttranscriptional regulation during early seed germination - Michal Krzyszton, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Poland 09:25-09:45 (20min)

› Early auxin response regulated by mRNA metabolism is key to environmental adaptation of Arabidopsis seedlings - Misato Ohtani, NAIST, The Univsersity of Tokyo, RIKEN CSRS, Japan 09:45-10:05 (20min)

› RNA Decay typically contributes to mRNA abundance regulation by opposing the impact of transcription - Leslie Sieburth, School of Biological Sciences, University of Utah, USA 10:40-11:00 (20min)

› A multi-transcriptomics approach identifies targets of the endoribonuclease DNE1 and provides insights on its coordination with decapping - Damien Garcia, Institut de biologie moléculaire des plantes, Strasbourg, France 11:00-11:20 (20min)

› A cochaperone complex mediates high temperature-induced co-translational mRNA decay in Arabidopsis - David Alabadi, Instituto de Biologia Molecular y Celular de Plantas, Spain 11:20-11:40 (20min)

› mRNA uridylation as a novel post-transcriptional process regulating seed maturation - Hélène Zuber, Institut de biologie moléculaire des plantes, Strasbourg, France 11:40-12:00 (20min)

›12:00 (1h50)

Lunch at Accomodation Center

12:00 - 13:50 (1h50)

Lunch at Accomodation Center

›13:50 (3h50)

Session 3 : RBPs identification and RNA splicing

13:50 - 17:40 (3h50)

Session 3 : RBPs identification and RNA splicing

› Partners in time - Insights into the binding landscape of RNA-binding proteins in Arabidopsis - Dorothee Staiger, RNA Biology and Molecular Physiology, Bielefeld University, Germany 13:50-14:30 (40min)

› A phase-separated compartment tunes cold acclimation of chloroplast RNA metabolism. - Christian Schmitz-Linneweber, Humboldt University, Berlin, Germany 14:30-14:50 (20min)

› Analysing phase separation of conserved translation factors during heat stress response in Arabidopsis thaliana - Magdalena Weingartner, University of Hamburg, Germany 14:50-15:10 (20min)

› When posttranslational modifications and splicing shake hands to fine-tune stress responses - Julieta Mateos, Instituto de Fisiología, Biología Molecular y Neurociencias [Buenos Aires], Argentina 15:10-15:30 (20min)

› RNA-binding proteins selectively associate with pre-mRNAs for plant temperature responses - Shih-Long Tu, Institute of Plant and Microbial Biology, Academia Sinica, Taiwan 16:00-16:20 (20min)

› MAC3A and MAC3B modulate FLM splicing to repress photoperiod-dependent floral transition - Chin-Mei Lee, Institute of Plant Biology, National Taiwan University, Taiwan 16:20-16:40 (20min)

› REVEILLE2 thermosensitive splicing: A molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock - Matt Jones, University of Glasgow, United Kingdom 16:40-17:00 (20min)

› CATSNAP – a machine-learning tool that reveals the plasticity of alternative splicing in plants and animals - Kamil Ruzicka, Institute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic 17:00-17:20 (20min)

›18:30 (3h30)

Poster Session and Buffet Diner

› Biodiversarium

18:30 - 22:00 (3h30)

Poster Session and Buffet Diner

Biodiversarium

› ECT2 Peptide Sequences Outside the YTH Domain Regulate m6A-RNA Binding - Cécile Bousquet-Antonelli, CNRS-LGDP-UMR5096, 58 Av. Paul Alduy 66860 Perpignan, France 18:30-22:00 (3h30)

› Role of redox regulation of the biogenesis of mRNP granules under heat stress conditions in Arabidopsis thaliana. - Margaux Legoux, Université de Perpignan Via Domitia, Laboratoire Génome et développement des plantes 18:30-22:00 (3h30)

› A role of the SERRATE C-terminal fragment in microRNA biogenesis - Oskar Kamiński, Department of Gene Expression, Faculty of Biology Adam Mickiewicz University in Poznan ul. Uniwersytetu Poznańskiego 6, 61-614 Poznań, POLAND 18:30-22:00 (3h30)

› A whole genomic overlays reveal exciting interplay between proteins, chromatin state, and unusual nucleic acid structures in Arabidopsis thaliana - Jiří Červeň, Ostravská univerzita / University of Ostrava 18:30-22:00 (3h30)

› Alternative splicing of RNA binding proteins from the RBP45 group is controlled by a structured mRNA motif. - Maren Reinhardt, Johannes Gutenberg University Mainz 18:30-22:00 (3h30)

› Arabidopsis mRNA decay landscape shaped by XRN 5′-3′ exoribonucleases - Ho-Ming Chen, Academia Sinica 18:30-22:00 (3h30)

› ARGONAUTE1, ARGONAUTE3, and ARGONAUTE4 ARE INVOLVED IN HYPOXIA TOLERANCE IN ARABIDOPSIS THALIANA - Pierdomenico Perata, PlantLab, Institute of Plant Sciences, Sant'Anna School of Advanced Studies 18:30-22:00 (3h30)

› Biochemical characterization of Dicer-like proteins DCL3 and DCL4 in cauliflower - Toshiyuki Fukuhara, Tokyo University of Agriculture and Technology 18:30-22:00 (3h30)

› Cajal Bodies Regulate Intron Retention Under Hypoxia Stress - Sylwia Górka, Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland 18:30-22:00 (3h30)

› Developing tools to examine repressive lncRNAs that are mechanistically conserved across eukaryotes - Xiaodan Zhang, Boyce Thompson Institute [Ithaca] 18:30-22:00 (3h30)

› DXO1 is required for effective rRNA processing in Arabidopsis - Monika Zakrzewska-Placzek, Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Pawinskiego 5A, 02-106 Warsaw 18:30-22:00 (3h30)

› eIF3E Domains Architecture and Phospho-Switches Control Pollen tube Growth and Membrane Morphology - Vinod Kumar, Institute of Experimental Botany of the Czech Academy of Sciences 18:30-22:00 (3h30)

› Eukaryotic Initiation Factors: Regulatory Insights into Selective Translation in Plant Developmental and Stress Responses - Jhen-Cheng Fang, Biotechnology Center in Southern Taiwan, Academia Sinica 18:30-22:00 (3h30)

› Multi-omics analysis reveals massive translational regulation during cold acclimation in tobacco - Jinghan Liu, Max Planck Institute of Molecular Plant Physiology 18:30-22:00 (3h30)

› Characterization of a CERES interacting protein with a potential role in translation regulation and stress response - Alfonso Muñoz, Centro de Biotecnología y Genómica de Plantas (UPM-INIA/CSIC), Campus de Montegancedo (UPM), Madrid, Spain, Departamento de Sistemas y Recursos Naturales, E.T.S.I de Montes, Forestal y del Medio Natural, UPM; 28040, Madrid, Spain 18:30-22:00 (3h30)

› Multi-transcriptomics identifies targets of the endoribonuclease DNE1 and highlights its coordination with decapping - Aude POUCLET, Institut de biologie moléculaire des plantes 18:30-22:00 (3h30)

› N6-methyladenosine (m6A) of mRNAs mediates the growth fitness of young Arabidopsis seedlings - Yen Chiun Chen, Institute of Plant and Microbial Biology (IPMB), Academia Sinica - Shu-Hsing Wu, Institute of Plant and Microbial Biology (IPMB), Academia Sinica 18:30-22:00 (3h30)

› Plant specific RS proteins possess opposing roles during light-dependent early seedling development in Arabidopsis thaliana - Hannah Walter, Johannes Gutenberg - Universität Mainz = Johannes Gutenberg University 18:30-22:00 (3h30)

› pre-mRNA splicing links photosynthesis activity to lateral root morphogenesis - Natsu Takayanagi, Graduate School of Frontier Sciences, The University of Tokyo 18:30-22:00 (3h30)

› Pseudouridine - an epitranscriptomic regulator of plant miRNAs - Marta Zimna, Adam Mickiewicz University in Poznań 18:30-22:00 (3h30)

› Regulation of Gene Expression in Trees: The Role of Transcription Start Site Selection - Mishaneh Asgari, Swedish University of Agricultural Sciences 18:30-22:00 (3h30)

› Regulation of RNA homeostasis and thermotolerance by plant specific splicing factors in tomato - Stavros Vraggalas, Institute of Molecular Biosciences, Molecular and Cell Biology of Plants, Goethe University Frankfurt, Frankfurt 18:30-22:00 (3h30)

› Rider of the Plant's defense storm: Turnip Mosaic Virus modulates Plant's stress granule response - Aimer A. Gutierrez Diaz, Swedish University of Agricultural Sciences = Sveriges lantbruksuniversitet 18:30-22:00 (3h30)

› RNA quality control ensures the epigenome and function of Arabidopsis centromeres - ATSUSHI SHIMADA, Okinawa Institute of Science and Technology Graduate University 18:30-22:00 (3h30)

› SD5/DROL1 protein, a subunit of Arabidopsis U5 snRNP, controls nutrient response through pre-mRNA splicing and jasmonic acid signaling - Ishibashi Kodai, Graduate School of Frontier Sciences, The University of Tokyo 18:30-22:00 (3h30)

› Searching for interactors of SOAR1, a translational regulator, in response to light - Esther Novo-Uzal, CBGP-UPM-INIA-CSIC 18:30-22:00 (3h30)

› Mechanisms and impact of ribosomal RNA methylation in plants - Sara Alina Neumann, LGDP UMR5096, Perpignan, France 18:30-22:00 (3h30)

› The role of RNA BINDING PROTEINS in seeds - Annabel D. Van Driel, Laboratory of Plant Physiology, Wageningen University and Research 18:30-22:00 (3h30)

› sRNA-mediated response to extreme daily temperature variations in the desert plant Nicotiana attenuata - Natalia Achkar, Centre for Research in Agricultural Genomics 18:30-22:00 (3h30)

› The circadian rhythm is affected by the defect of uORFs in Arabidopsis clock gene LHY - Haruka Aoyama, Graduate School of Life Science, Hokkaido University [Sapporo, Japan] 18:30-22:00 (3h30)

› The effects of seed maturation at high temperatures on translational regulation during seed germination - Lars Bakermans, Laboratory of Plant Physiology, Wageningen University and Research 18:30-22:00 (3h30)

› Transcriptomic insights into A.thaliana cold stress response - Zuzanna Zając, Doctoral School of Natural Sciences, Adam Mickiewicz University, Poznan, Poland, Centre for Advanced Technologies, Uniwersytetu Poznanskiego 10, 61-614 Poznan, Poland 18:30-22:00 (3h30)

› The role of DEAD-box helicases: RH11, RH37, RH52 in miRNA biogenesis - Daria Stube, Adam Mickiewicz University, Poznań 18:30-22:00 (3h30)

› Two plant mitochondrial long non-coding RNAs – structure, expression and function - Hanna Janska, Department of Cellular Molecular Biology, Faculty of Biotechnology, University of Wroclaw 18:30-22:00 (3h30)

› ULT1 is a PRC2 dependent RNA binding protein and regulates indeterminacy - Vangeli Geshkovski, Laboratoire de Physiologie Cellulaire et Végétale 18:30-22:00 (3h30)

› Writers and reader: shaping and decoding the epitranscriptome landscape during the development of lateral root organs in the legume Medicago truncatula - Maria Eugenia Zanetti, IBBM Universidad Nacional de La Plata and CONICET 18:30-22:00 (3h30)

› The Arabidopsis deNADding enzyme DXO1 modulates the plant immunity response - Anna Golisz-Mocydlarz, Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Pawinskiego 5A, 02-106 Warsaw 18:30-22:00 (3h30)

› MicroRNA controls the level of evolutionarily conserved DUSP12 phosphatase involved in spermatogenesis in Marchantia polymorpha - Halina Pietrykowska, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University in Poznan, Poznan 18:30-22:00 (3h30)

› SVALKA-POLYCOMB REPRESSIVE COMPLEX2 module controls C-REPEAT BINDING FACTOR3 induction during cold acclimation - Rafael Catala, Departamento de Biotecnología Microbiana y de Plantas, Centro de Investigaciones Biológicas Margarita Salas-CSIC, Ramiro de Maeztu 9, 28040 Madrid 18:30-22:00 (3h30)

› The DEAD-box helicases DRH1, RH46 and RH40 remodel the secondary structure of miRNA precursors to regulate miRNA biogenesis - Monika Jozwiak, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Poznan 18:30-22:00 (3h30)

› Understanding plant translational reprograming in response to multi-stresses - M. Mar Castellano, Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo, 20223, Madrid, Spain 18:30-22:00 (3h30)

› The impact of AtCAF1i/k deadenylases on de novo shoot organogenesis and poly(A) tail length in Arabidopsis - Toshihiro Arae, Graduate School of Frontier Sciences, The University of Tokyo 18:30-22:00 (3h30)

› Role of phloem Cold Shock Proteins in mRNA mobility - Diego Pinheiro Brito, Max-Planck Institute of Molecular Plant Physiology 18:30-22:00 (3h30)